Diagnosis & tests

Imaging in IBD

Last Updated Nov 11, 2025

Inflammatory bowel disease care uses both scopes and imaging. Endoscopy shows the inner lining and allows biopsies. Imaging shows the bowel wall and the areas around it that scopes cannot see. This article explains when to choose magnetic resonance enterography (MRE) or computed tomography enterography (CTE), and how these tests work with scopes to guide safe, timely decisions.

  • Imaging complements scopes. Scopes see the lining, imaging sees the bowel wall and beyond.

  • MRE avoids radiation and suits repeated follow up, especially in Crohn’s disease.

  • CTE is fast and widely available, useful in urgent situations.

  • Pelvic MRI maps perianal fistulas better than CT.

  • In ulcerative colitis, imaging is reserved for complications or severe disease.

How imaging complements scopes

Endoscopy, usually a colonoscopy or flexible sigmoidoscopy, views only the inner surface. It confirms diagnosis with biopsies and checks for dysplasia. Imaging adds key pieces that scopes miss.

  • It shows the full thickness of the bowel wall and the length of inflamed segments.

  • It detects problems outside the bowel, such as abscesses, fistulas, and enlarged lymph nodes.

  • It evaluates small bowel sections that a scope cannot reach.

  • It helps separate active inflammation from fixed scarring in strictures, which guides therapy choices.

For Crohn’s disease, which is transmural, cross‑sectional imaging is essential at diagnosis to map extent and complications. For ulcerative colitis, which affects the lining of the colon, imaging is used mainly when symptoms suggest complications or when disease is severe. Editor note: source required.

MRE vs CTE at a glance

Feature

MRE (magnetic resonance enterography)

CTE (computed tomography enterography)

Preferred when

Radiation

None

Yes

Young patients, repeated imaging, pregnancy when feasible

Speed and access

Longer exam, less available

Very fast, widely available

Emergency evaluation, severe pain

Soft tissue detail

Excellent

Excellent

Both are accurate for active inflammation. Editor note: source required.

Strictures

Can suggest inflammation vs fibrosis, imperfect

Excellent for obstruction

When obstruction is suspected urgently

Perianal disease

Pelvic MRI maps fistulas well

Limited detail

Suspected perianal fistula or abscess

Implants

Some implants exclude MRI

No issue

If MRI is contraindicated

Pregnancy

MRI without gadolinium preferred

Avoid CT unless necessary

Pregnant patients with nonurgent needs. Editor note: source required.

When to use MRE

  • Baseline mapping in suspected or confirmed small bowel Crohn’s disease.

  • Follow up after a major therapy change to document healing without radiation.

  • Evaluation of strictures when inflammation versus scarring is unclear.

  • Recurrent symptoms with raised biomarkers when colonoscopy is normal.

  • Children, adolescents, and younger adults who need repeated imaging.

Typical experience: Patients fast, drink oral contrast to distend the small bowel, and receive an antispasmodic to reduce motion. The scan takes about 30 to 45 minutes with short breath holds. Some protocols use gadolinium contrast through a vein. Editor note: source required.

Key cautions: Severe kidney disease limits the use of gadolinium contrast. Claustrophobia and certain metal implants can prevent MRI. Scheduling can take longer compared with CT.

When to use CTE

  • Urgent evaluation of severe pain, fever, or suspected obstruction or perforation.

  • When MRI is not available, contraindicated, or cannot be scheduled quickly.

  • Postoperative patients when speed and surgical planning are priorities.

Typical experience: Patients fast, drink oral contrast, then undergo a 5 to 10 minute scan with iodinated intravenous contrast. Results are available rapidly, which helps emergency care.

Key cautions: CTE uses ionizing radiation. Iodinated contrast can affect kidney function and may cause allergic reactions. The benefit of a rapid diagnosis often outweighs these risks in emergencies. Editor note: source required.

What about other imaging?

  • Pelvic MRI: The preferred study for perianal Crohn’s disease to map fistulas and abscesses before medical or surgical treatment. Editor note: source required.

  • Intestinal ultrasound (IUS): A radiation‑free option that can monitor bowel thickness and blood flow at the bedside in experienced centers. It is useful for quick checks during treat‑to‑target follow up. Availability varies by region. Editor note: source required.

  • Plain abdominal x‑ray: Helpful in severe colitis to screen for toxic megacolon or perforation.

  • CT without enterography protocol: Common in emergency rooms when enterography is not possible. It still detects many urgent problems.

How imaging and scopes work together across the care pathway

  • At diagnosis: Colonoscopy with biopsies confirms IBD and rules out infections or mimics. For suspected Crohn’s disease, MRE or CTE maps small bowel involvement and looks for abscesses or fistulas.

  • During a flare: If symptoms are severe or fever is present, CT is often used first to exclude obstruction, abscess, or perforation, then targeted treatment follows. Editor note: source required.

  • Treat‑to‑target monitoring: Biomarkers such as C‑reactive protein and fecal calprotectin guide timing. If biomarkers rise or symptoms persist, MRE or IUS can check for active disease when colonoscopy is normal or cannot reach the small bowel. The optimal imaging interval depends on risk, response, and prior findings. Editor note: source required.

  • Before surgery: Imaging defines the length and location of diseased segments and looks for hidden abscesses or additional fistulas that change the surgical plan.

Practical preparation tips

  • Most enterography exams require fasting for 4 to 6 hours and drinking 1 to 2 liters of oral contrast.

  • Bring a current medication list, including kidney‑related medicines like metformin or diuretics.

  • Tell the team about implants, prior reactions to contrast, and pregnancy status.

  • Plan for restroom access after the study. The oral contrast can speed bowel movements.

FAQs

Does imaging replace colonoscopy?

No. Colonoscopy provides biopsies to confirm diagnosis, check for dysplasia, and grade mucosal healing. Imaging adds depth and detects complications that scopes cannot see. Both are needed at different points in care.

Which test is better overall, MRE or CTE?

Neither is best for every situation. MRE avoids radiation and suits repeated monitoring. CTE is faster and ideal when urgent answers are needed. The choice depends on urgency, availability, safety factors, and the clinical question. Editor note: source required.